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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
ATAC-seq
7
total RNA-seq
4
DNase-seq
4
Hi-C
1
WGBS
Assay category
66
DNA binding
7
Transcription
4
3D chromatin structure
4
DNA accessibility
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
67
October, 2019
June, 2019
7
May, 2019
5
July, 2019
3
February, 2020
Available data
74
bam
57
bigWig
52
bed narrowPeak
52
bigBed narrowPeak
7
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
82
Homo sapiens
Biosample type
82
tissue
Organ
790
pancreas
766
liver
641
connective tissue
484
adipose tissue
401
epithelium
271
heart
252
brain
198
kidney
183
vasculature
179
blood vessel
147
bone element
94
artery
82
limb
68
blood
68
bodily fluid
52
musculature of body
42
nerve
37
embryo
26
eye
24
spleen
22
vein
20
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
82
AMP
Genome assembly (visualization)
56
GRCh38
56
hg19
Lab
82
AMP-T2D consortium
assay_title!
ATAC-seq
month_released!
June, 2019
BIOSAMPLE
ASSAY
82 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
WGBS
tissue
tibial nerve
35
5
2
tibial artery
23
1
2
muscle of leg
7
1
gastrocnemius medialis
1
4
islet of Langerhans
1
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