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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
237
ChIP-seq
189
total RNA-seq
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
237
DNA binding
193
Transcription
7
DNA methylation
6
DNA accessibility
4
3D chromatin structure
1
DNA sequencing
Target of assay
97
transcription factor
88
histone modification
87
histone
53
narrow histone mark
52
control
34
broad histone mark
24
RNA binding protein
16
recombinant protein
8
chromatin remodeller
Date released
November, 2017
194
May, 2020
63
December, 2017
53
August, 2017
53
November, 2018
35
August, 2021
20
May, 2022
10
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
2
June, 2019
1
December, 2018
1
February, 2020
Available data
364
bam
333
bigWig
174
tsv
169
bed narrowPeak
149
fastq
108
bigBed narrowPeak
74
tagAlign
13
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
453
Homo sapiens
Biosample type
340
tissue
85
cell line
15
in vitro differentiated cells
13
primary cell
Organ
794
pancreas
659
connective tissue
485
adipose tissue
453
liver
415
epithelium
306
heart
279
kidney
191
brain
184
vasculature
181
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
453
AMP
Genome assembly (visualization)
336
hg19
311
GRCh38
Lab
402
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
4
inconsistent control run_type
assay_title!
ATAC-seq
month_released!
November, 2017
BIOSAMPLE
ASSAY
453 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
145
167
2
3
1
1
1
1
1
right lobe of liver
10
3
2
1
2
cell line
HepG2
63
14
1
2
2
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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