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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
6
Hi-C
total RNA-seq
5
RRBS
2
small RNA-seq
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
34
DNA accessibility
6
3D chromatin structure
6
DNA methylation
3
Transcription
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
8
July, 2019
7
May, 2019
3
March, 2020
2
May, 2022
Available data
63
bigWig
60
bed narrowPeak
53
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
tsv
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
89
Homo sapiens
Biosample type
76
tissue
13
primary cell
Organ
579
liver
391
pancreas
290
epithelium
265
brain
234
heart
219
kidney
185
connective tissue
129
vasculature
123
blood vessel
107
limb
89
musculature of body
87
adipose tissue
85
bone element
68
blood
68
bodily fluid
40
artery
37
nerve
24
spleen
23
embryo
22
vein
20
lung
18
ureter
14
eye
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
stomach
1
urinary bladder
Project
89
AMP
Genome assembly (visualization)
68
hg19
49
GRCh38
Lab
89
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
ATAC-seq
total RNA-seq
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
DNase-seq
Hi-C
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
psoas muscle
2
1
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primary cell
skeletal muscle satellite cell
8
1
skeletal muscle cell
2
1
1
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