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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
ATAC-seq
24
total RNA-seq
6
DNase-seq
4
pCHi-C
1
RRBS
Assay category
40
DNA binding
24
Transcription
6
DNA accessibility
1
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
12
control
11
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
61
October, 2019
7
June, 2019
4
February, 2023
2
February, 2020
1
July, 2019
Available data
48
bam
36
bigWig
32
bed narrowPeak
32
bigBed narrowPeak
10
tsv
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
75
Homo sapiens
Biosample type
70
tissue
5
primary cell
Organ
794
pancreas
768
liver
659
connective tissue
485
adipose tissue
421
epithelium
306
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
75
AMP
Genome assembly (visualization)
37
hg19
36
GRCh38
Lab
75
AMP-T2D consortium
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
75 results
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ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
RRBS
tissue
tibial nerve
35
5
2
islet of Langerhans
2
14
4
retina
3
3
pigmented layer of retina
2
primary cell
retinal pigment epithelial cell
3
1
1
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