Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
87
ChIP-seq
37
DNase-seq
ATAC-seq
7
total RNA-seq
4
Hi-C
3
WGBS
1
pCHi-C
Assay category
87
DNA binding
37
DNA accessibility
7
Transcription
4
3D chromatin structure
3
DNA methylation
Target of assay
56
histone
56
histone modification
38
broad histone mark
25
control
18
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
68
October, 2019
32
June, 2019
9
November, 2018
7
December, 2018
7
January, 2019
7
May, 2019
5
July, 2019
3
February, 2020
1
March, 2020
Available data
129
bam
104
bigWig
97
bed narrowPeak
97
bigBed narrowPeak
37
bed bed3+
37
bed broadPeak
37
bigBed broadPeak
23
fastq
8
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
139
Homo sapiens
Biosample type
139
tissue
Organ
794
pancreas
768
liver
659
connective tissue
485
adipose tissue
421
epithelium
346
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
139
AMP
Genome assembly (visualization)
103
GRCh38
101
hg19
Lab
139
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
139 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
2
5
tibial artery
23
2
1
spleen
20
1
2
1
muscle of leg
7
13
1
muscle of arm
17
+ See 4 more…
See all biosamples
Download