Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
844
ChIP-seq
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
844
DNA binding
210
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
280
August, 2017
226
October, 2019
193
May, 2020
165
August, 2021
163
June, 2019
120
July, 2018
111
May, 2019
82
November, 2017
76
April, 2019
71
July, 2019
63
October, 2018
47
September, 2023
46
December, 2017
40
May, 2021
38
March, 2020
28
May, 2022
26
November, 2018
25
February, 2020
20
November, 2019
19
April, 2020
16
February, 2023
15
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
August, 2022
1
March, 2019
Available data
1820
bam
1667
bigWig
1075
tsv
715
bed narrowPeak
538
bigBed narrowPeak
333
fastq
238
tagAlign
211
bed broadPeak
203
bed bed3+
176
bigBed broadPeak
157
txt
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2445
Homo sapiens
Biosample type
2454
tissue
878
primary cell
568
cell line
341
in vitro differentiated cells
10
stem cell
Organ
536
connective tissue
477
adipose tissue
435
pancreas
338
liver
261
brain
229
heart
223
kidney
146
bone element
114
limb
92
blood vessel
92
vasculature
81
musculature of body
42
nerve
35
artery
28
eye
24
spleen
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2368
AMP
47
KPMP
20
T1D
19
LungMap
Genome assembly (visualization)
1639
GRCh38
1611
hg19
Lab
2271
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
ATAC-seq
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
2454 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
298
69
1
7
4
3
1
1
4
liver
167
144
2
1
3
1
1
1
1
kidney
49
26
13
64
6
1
1
1
bone element
84
+ See 166 more…
See all biosamples
Download