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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
total RNA-seq
ATAC-seq
13
ChIP-seq
6
MeRIP-seq
2
Capture-C
2
pCHi-C
1
Hi-C
1
STARR-seq
Assay category
36
Transcription
13
DNA binding
1
3D chromatin structure
Target of assay
histone
12
histone modification
8
control
8
transcription factor
7
recombinant protein
6
broad histone mark
6
narrow histone mark
3
nucleotide modification
1
RNA binding protein
Date released
26
February, 2021
13
October, 2019
6
November, 2020
5
November, 2019
4
March, 2020
4
May, 2021
3
August, 2021
Available data
49
bam
44
bigWig
38
tsv
8
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
61
Homo sapiens
Biosample type
103
in vitro differentiated cells
88
tissue
61
cell line
25
primary cell
1
stem cell
Organ
45
epithelium
45
pancreas
15
kidney
Project
59
AMP
2
T1D
Genome assembly (visualization)
45
hg19
44
GRCh38
Lab
54
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
Audit category:
61
inconsistent ontology term
1
inconsistent control
assay_title!
ATAC-seq
target.investigated_as!
histone
BIOSAMPLE
ASSAY
61 results
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total RNA-seq
ChIP-seq
MeRIP-seq
Capture-C
pCHi-C
Hi-C
STARR-seq
cell line
EndoC_BH1
33
3
6
2
1
RCC 7860 HIF1a re-expression
1
4
RCC 7860 vector
1
3
1
RCC 7860 HIF2a over-expression
1
3
RCC 7860 VHL
1
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