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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
42
ChIP-seq
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
88
DNA accessibility
58
DNA methylation
42
DNA binding
10
3D chromatin structure
Target of assay
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
95
May, 2022
76
February, 2023
75
May, 2021
56
September, 2020
48
July, 2018
47
February, 2021
47
May, 2020
43
April, 2018
36
June, 2019
31
July, 2019
27
September, 2018
18
August, 2017
11
October, 2019
8
January, 2021
6
November, 2017
5
December, 2019
5
November, 2020
3
August, 2018
3
June, 2018
3
October, 2022
2
May, 2019
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
322
bam
305
bigWig
304
fastq
258
tsv
114
zippedFastqFolder
40
bed narrowPeak
40
bigBed narrowPeak
34
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
2
tagAlign
1
tar
Organism
651
Homo sapiens
Biosample type
1890
tissue
651
primary cell
595
cell line
240
in vitro differentiated cells
8
stem cell
Organ
268
epithelium
217
pancreas
29
connective tissue
26
kidney
20
vasculature
18
brain
15
blood vessel
11
heart
10
liver
8
blood
8
bodily fluid
7
vein
6
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
275
HPAP
255
AMP
120
T1D
1
ITG
Genome assembly (visualization)
314
hg19
289
GRCh38
Lab
275
Klaus Kaestner, Upenn
250
AMP-T2D consortium
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
25
inconsistent ontology term
assay_title!
ATAC-seq
target.investigated_as!
histone
BIOSAMPLE
ASSAY
651 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
12
31
6
1
monocyte
54
1
1
pancreatic beta cell
21
12
16
6
1
exocrine cell
39
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