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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
17
total RNA-seq
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
28
DNA binding
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
31
control
histone
20
histone modification
11
narrow histone mark
9
broad histone mark
Date released
16
July, 2019
15
November, 2017
12
February, 2020
8
October, 2019
3
May, 2019
3
October, 2017
2
March, 2020
Available data
75
bam
54
bigWig
bed narrowPeak
36
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
26
tsv
19
tagAlign
10
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
Organism
59
Homo sapiens
Biosample type
49
tissue
10
primary cell
Organ
620
pancreas
549
connective tissue
446
adipose tissue
328
liver
301
epithelium
202
heart
160
kidney
147
bone element
98
vasculature
96
blood vessel
67
artery
59
brain
29
limb
29
musculature of body
25
eye
22
embryo
20
lung
16
nerve
14
blood
14
bodily fluid
11
spleen
4
skeleton
4
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
59
AMP
Genome assembly (visualization)
20
hg19
12
GRCh38
Lab
59
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
ATAC-seq
target.investigated_as!
histone
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
3
1
1
cerebellum (Hemisphere)
2
1
1
temporal lobe
2
1
1
caudate nucleus
2
1
frontal cortex
2
1
+ See 20 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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