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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
ATAC-seq
5
DNase-seq
1
FAIRE-seq
Assay category
98
DNA binding
89
Transcription
15
DNA methylation
6
DNA accessibility
Target of assay
199
histone modification
histone
109
broad histone mark
88
narrow histone mark
50
control
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
Date released
693
February, 2021
318
November, 2017
225
May, 2021
223
August, 2021
214
May, 2020
208
August, 2017
199
June, 2019
168
July, 2018
123
May, 2022
102
February, 2023
102
July, 2019
96
October, 2019
88
November, 2018
63
December, 2017
57
March, 2020
56
September, 2020
49
April, 2018
47
September, 2023
46
October, 2018
35
December, 2018
28
May, 2019
27
September, 2018
25
February, 2020
25
November, 2019
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
15
November, 2020
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
3
October, 2017
1
August, 2022
1
March, 2019
Available data
180
fastq
175
bam
145
bigWig
89
tsv
30
bed narrowPeak
21
bed bed3+
11
tagAlign
7
bigBed narrowPeak
6
bed bedMethyl
6
bigBed bedMethyl
4
bed broadPeak
4
bigBed broadPeak
Organism
207
Homo sapiens
Biosample type
159
tissue
31
in vitro differentiated cells
18
primary cell
Organ
119
pancreas
55
connective tissue
24
adipose tissue
21
liver
12
epithelium
7
musculature of body
Project
208
AMP
Genome assembly (visualization)
149
hg19
142
GRCh38
Lab
208
AMP-T2D consortium
Audit category:
23
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
ATAC-seq
target.investigated_as!
histone
BIOSAMPLE
ASSAY
208 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
14
89
1
1
liver
16
3
1
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
3
skeletal muscle tissue
3
4
+ See 3 more…
in vitro differentiated cells
adipocyte
30
1
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
skeletal muscle myoblast
3
1
2
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