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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
2
ChIP-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
3
DNA accessibility
2
3D chromatin structure
2
DNA binding
Target of assay
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
6
October, 2019
2
March, 2020
Available data
5
bam
3
bed narrowPeak
3
bigBed narrowPeak
3
bigWig
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tar
1
tsv
Organism
8
Homo sapiens
Biosample type
7
primary cell
1
tissue
Organ
666
liver
643
pancreas
581
connective tissue
453
adipose tissue
328
epithelium
249
heart
249
kidney
147
bone element
119
vasculature
114
blood vessel
95
brain
76
artery
67
blood
67
bodily fluid
65
limb
62
musculature of body
30
eye
25
embryo
20
lung
18
nerve
18
spleen
18
ureter
7
vein
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
8
AMP
Genome assembly (visualization)
5
hg19
2
GRCh38
Lab
8
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
ATAC-seq
target.investigated_as!
histone
BIOSAMPLE
ASSAY
8 results
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ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
pCHi-C
primary cell
endothelial cell of umbilical vein
2
2
2
1
tissue
esophagus
1
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