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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
23
DNase-seq
9
ChIP-seq
Assay category
23
DNA accessibility
9
DNA binding
Target of assay
88
histone
histone modification
57
broad histone mark
31
narrow histone mark
9
transcription factor
6
RNA binding protein
3
recombinant protein
Date released
23
June, 2019
5
May, 2024
2
November, 2017
2
November, 2018
Available data
336
fastq
333
bam
186
tsv
157
txt
114
zippedFastqFolder
66
tagAlign
54
bigWig
32
bed narrowPeak
27
bigBed narrowPeak
23
bed bed3+
23
bed broadPeak
23
bigBed broadPeak
17
bed bedMethyl
17
bigBed bedMethyl
8
csv
2
bedpe bed3+
1
hic
1
vcf
Organism
32
Homo sapiens
Biosample type
21
tissue
7
primary cell
4
cell line
Organ
10
brain
8
heart
7
kidney
6
epithelium
4
liver
2
pancreas
1
blood vessel
1
connective tissue
1
vasculature
Project
32
AMP
Genome assembly (visualization)
hg19
637
GRCh38
Lab
27
AMP-T2D consortium
5
Patrick T. Ellinor, Broad
assay_title!
ATAC-seq
target.investigated_as!
histone modification
assembly!
hg19
BIOSAMPLE
ASSAY
32 results
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DNase-seq
ChIP-seq
tissue
left cardiac atrium
5
body of pancreas
2
heart
2
Ammon's horn
1
caudate nucleus
1
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primary cell
glomerular visceral epithelial cell
2
kidney tubule cell
2
cardiac fibroblast
1
kidney capillary endothelial cell
1
kidney glomerular epithelial cell
1
cell line
HepG2
4
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