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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
93
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
94
Transcription
2
DNA accessibility
Date released
693
February, 2021
318
November, 2017
225
May, 2021
223
August, 2021
214
May, 2020
207
August, 2017
199
June, 2019
168
July, 2018
123
May, 2022
102
February, 2023
102
July, 2019
96
October, 2019
88
November, 2018
63
December, 2017
57
March, 2020
56
September, 2020
49
April, 2018
47
September, 2023
46
October, 2018
35
December, 2018
28
May, 2019
27
September, 2018
25
February, 2020
25
November, 2019
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
15
November, 2020
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
3
October, 2017
1
August, 2022
1
March, 2019
Available data
76
fastq
4
tsv
4
txt
Organism
101
Homo sapiens
Biosample type
76
primary cell
16
tissue
6
cell line
4
in vitro differentiated cells
Organ
45
pancreas
40
epithelium
4
bone element
4
connective tissue
4
eye
4
skeleton
1
heart
Project
76
HPAP
14
AMP
12
T1D
Lab
76
Klaus Kaestner, Upenn
14
AMP-T2D consortium
12
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
assay_title!
ATAC-seq
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
102 results
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Clear Filters
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
tissue
islet of Langerhans
5
2
pigmented layer of retina
2
retina
2
acetabular part of hip bone
1
heart
1
+ See 3 more…
cell line
EndoC_BH1
3
2
1
in vitro differentiated cells
immature adipocyte
2
adipocyte
1
preadipocyte
1
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