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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
10
total RNA-seq
STARR-seq
3
Hi-C
ATAC-seq
1
whole genome sequencing assay
Assay category
18
DNA binding
10
Transcription
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
31
August, 2021
1
March, 2019
Available data
14
bed narrowPeak
14
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
32
Homo sapiens
Biosample type
29
cell line
3
tissue
Organ
29
liver
3
pancreas
Project
32
AMP
Genome assembly (visualization)
16
hg19
Lab
3564
AMP-T2D consortium
309
Kyle Gaulton, UCSD
275
Klaus Kaestner, Upenn
67
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
32
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
assay_title!
ATAC-seq
STARR-seq
target.investigated_as!
other context
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
total RNA-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
18
9
1
1
tissue
islet of Langerhans
1
2
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