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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
single cell RNA-seq
36
total RNA-seq
ATAC-seq
13
ChIP-seq
2
Hi-C
Assay category
76
Transcription
13
DNA binding
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
693
February, 2021
406
August, 2017
404
November, 2017
365
May, 2021
292
October, 2019
243
August, 2021
241
May, 2020
218
June, 2019
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
102
July, 2019
94
December, 2017
85
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
38
fastq
33
bam
31
bigWig
20
tsv
19
zippedFastqFolder
11
bed narrowPeak
2
bedpe bed3+
2
hic
Organism
91
Homo sapiens
Biosample type
56
primary cell
20
tissue
15
cell line
Organ
51
pancreas
31
epithelium
Project
56
HPAP
35
AMP
Genome assembly (visualization)
33
hg19
31
GRCh38
Lab
56
Klaus Kaestner, Upenn
35
AMP-T2D consortium
Audit category:
15
inconsistent ontology term
assay_title!
ATAC-seq
target.investigated_as!
other context
BIOSAMPLE
ASSAY
91 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
Hi-C
primary cell
Langerhans cell
40
pancreatic alpha cell
15
pancreatic beta cell
1
tissue
islet of Langerhans
19
1
cell line
EndoC_BH1
1
13
1
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