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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
32
DNase-seq
17
total RNA-seq
ATAC-seq
4
small RNA-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
190
DNA binding
33
DNA accessibility
21
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
control
3
RNA binding protein
3
transcription factor
Date released
78
October, 2019
76
November, 2017
30
June, 2019
25
May, 2019
14
July, 2019
12
February, 2020
12
October, 2017
2
March, 2020
2
November, 2018
Available data
214
bigWig
211
bam
203
bed narrowPeak
127
bigBed narrowPeak
99
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
23
tsv
15
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
251
Homo sapiens
Biosample type
236
tissue
15
primary cell
Organ
741
pancreas
658
liver
624
connective tissue
461
adipose tissue
391
epithelium
326
heart
267
kidney
251
brain
168
vasculature
163
blood vessel
147
bone element
97
limb
89
musculature of body
87
artery
62
blood
62
bodily fluid
32
eye
31
nerve
30
embryo
20
lung
20
vein
18
ureter
13
spleen
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
251
AMP
Genome assembly (visualization)
212
GRCh38
157
hg19
Lab
251
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
ATAC-seq
target.investigated_as!
other context
control
BIOSAMPLE
ASSAY
251 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
17
14
1
1
layer of hippocampus
20
caudate nucleus
13
1
1
substantia nigra
14
1
temporal lobe
13
1
1
+ See 75 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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