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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
2
WGBS
2
pCHi-C
ATAC-seq
1
DNase-seq
Assay category
17
DNA binding
2
DNA methylation
1
DNA accessibility
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
other context
3
other post-translational modification
2
narrow histone mark
Date released
7
December, 2018
7
January, 2019
6
November, 2018
2
March, 2020
Available data
20
bam
20
fastq
12
bigWig
10
bed narrowPeak
10
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
22
Homo sapiens
Biosample type
22
tissue
Organ
794
pancreas
766
liver
659
connective tissue
485
adipose tissue
421
epithelium
346
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
22
vein
21
spleen
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
22
AMP
Genome assembly (visualization)
12
GRCh38
10
hg19
Lab
22
AMP-T2D consortium
assay_title!
ATAC-seq
target.investigated_as!
other context
BIOSAMPLE
ASSAY
22 results
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ChIP-seq
WGBS
pCHi-C
DNase-seq
tissue
spleen
17
2
1
1
sigmoid colon
1
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