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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
215
ChIP-seq
32
DNase-seq
17
total RNA-seq
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
215
DNA binding
33
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
transcription factor
Date released
88
November, 2017
85
October, 2019
30
June, 2019
28
May, 2019
17
July, 2019
15
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
Available data
238
bam
217
bigWig
200
bed narrowPeak
124
bigBed narrowPeak
118
tagAlign
44
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
26
tsv
17
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
279
Homo sapiens
Biosample type
261
tissue
18
primary cell
Organ
775
pancreas
619
connective tissue
468
adipose tissue
430
liver
412
epithelium
294
heart
279
brain
269
kidney
181
vasculature
176
blood vessel
147
bone element
114
limb
95
musculature of body
91
artery
42
nerve
34
embryo
32
eye
22
vein
20
lung
18
spleen
18
ureter
17
blood
17
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
279
AMP
Genome assembly (visualization)
212
GRCh38
160
hg19
Lab
279
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
ATAC-seq
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
279 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 75 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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