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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
254
ChIP-seq
243
total RNA-seq
188
ATAC-seq
180
single cell RNA-seq
56
snATAC-seq
47
WGBS
28
DNase-seq
16
pCHi-C
10
Hi-C
8
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
254
DNA binding
Target of assay
220
histone
220
histone modification
114
broad histone mark
106
narrow histone mark
27
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
53
August, 2017
32
September, 2018
24
October, 2019
9
June, 2019
9
November, 2017
4
August, 2021
2
May, 2019
Available data
227
bigWig
217
bam
206
bed narrowPeak
100
tagAlign
94
fastq
37
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
3
bed bed3+
Organism
254
Homo sapiens
Biosample type
905
tissue
459
cell line
254
primary cell
191
in vitro differentiated cells
3
stem cell
Organ
86
epithelium
70
pancreas
23
vasculature
20
blood vessel
17
vein
9
brain
9
kidney
4
liver
3
eye
2
musculature of body
1
connective tissue
1
heart
Project
170
AMP
84
T1D
Genome assembly (visualization)
227
hg19
187
GRCh38
Lab
137
AMP-T2D consortium
117
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
CRISPR RNA-seq
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
254 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
skeletal muscle myoblast
15
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