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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
Assay category
27
DNA binding
Target of assay
346
transcription factor
88
recombinant protein
83
control
59
RNA binding protein
27
histone
27
histone modification
19
chromatin remodeller
14
narrow histone mark
13
broad histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
10
November, 2019
7
October, 2019
4
November, 2017
3
August, 2021
1
January, 2019
1
March, 2020
1
May, 2021
Available data
26
bed narrowPeak
26
bigWig
24
bam
11
bigBed narrowPeak
5
fastq
3
bed broadPeak
3
bigBed broadPeak
Organism
27
Homo sapiens
Biosample type
621
tissue
232
primary cell
105
in vitro differentiated cells
27
cell line
Organ
19
pancreas
12
epithelium
7
liver
1
blood
1
bodily fluid
Project
25
AMP
2
T1D
Genome assembly (visualization)
26
hg19
23
GRCh38
Lab
24
AMP-T2D consortium
3
Bing Ren, UCSD
Audit category:
12
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
assay_title!
CRISPR RNA-seq
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
27 results
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Clear Filters
ChIP-seq
cell line
EndoC_BH1
12
HepG2
7
Panc1
7
GM12878
1
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