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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
Assay category
17
DNA binding
Target of assay
979
histone modification
978
histone
495
narrow histone mark
482
broad histone mark
475
transcription factor
339
control
102
RNA binding protein
88
recombinant protein
17
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
9
November, 2017
January, 2019
3
December, 2017
2
December, 2018
2
November, 2018
1
August, 2017
Available data
17
bam
17
bed narrowPeak
17
bigBed narrowPeak
17
bigWig
17
fastq
4
bed broadPeak
4
bigBed broadPeak
Organism
17
Homo sapiens
Biosample type
13
cell line
2
tissue
1
in vitro differentiated cells
1
primary cell
Organ
12
liver
4
blood
4
bodily fluid
1
epithelium
Project
17
AMP
Genome assembly (visualization)
17
hg19
16
GRCh38
Lab
17
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
8
inconsistent control run_type
assay_title!
CRISPR RNA-seq
audit.WARNING.category!
inconsistent control read length
month_released!
January, 2019
BIOSAMPLE
ASSAY
17 results
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ChIP-seq
cell line
HepG2
9
GM12878
4
tissue
liver
2
in vitro differentiated cells
hepatocyte
1
primary cell
skeletal muscle myoblast
1
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