Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
ATAC-seq
2
Hi-C
1
pCHi-C
Assay category
10
DNA accessibility
2
3D chromatin structure
Date released
10
February, 2021
2
November, 2019
1
August, 2021
Available data
bigWig
509
bam
400
bed narrowPeak
367
fastq
351
bigBed narrowPeak
105
tsv
59
bed broadPeak
59
bigBed broadPeak
17
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
Organism
13
Homo sapiens
Biosample type
108
tissue
43
in vitro differentiated cells
32
primary cell
13
cell line
1
stem cell
Organ
8
artery
8
blood vessel
8
heart
8
vasculature
3
liver
2
epithelium
2
pancreas
Project
13
AMP
Genome assembly (visualization)
13
hg19
10
GRCh38
Lab
12
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
1
inconsistent replicate
assay_title!
CRISPR RNA-seq
files.file_type!
bigWig
BIOSAMPLE
ASSAY
13 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
Hi-C
pCHi-C
cell line
smooth muscle cell of the coronary artery
8
HepG2
1
1
1
EndoC_BH1
1
1
See all biosamples
Download