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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
120
ChIP-seq
4
GRO-seq
3
pCHi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
129
Transcription
120
DNA binding
1
DNA accessibility
Target of assay
65
histone
65
histone modification
33
narrow histone mark
33
transcription factor
31
broad histone mark
22
control
6
RNA binding protein
3
chromatin remodeller
Date released
79
May, 2021
54
August, 2017
43
December, 2017
39
February, 2018
22
February, 2021
7
August, 2021
4
January, 2018
4
March, 2020
2
December, 2019
2
October, 2019
1
August, 2018
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
257
Homo sapiens
Biosample type
1356
tissue
553
primary cell
541
cell line
257
in vitro differentiated cells
8
stem cell
Organ
60
connective tissue
29
embryo
21
epithelium
15
liver
1
adipose tissue
1
heart
Project
257
AMP
Genome assembly (visualization)
230
GRCh38
230
hg19
4
hg18
Lab
257
AMP-T2D consortium
Audit category:
94
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
CRISPR RNA-seq
BIOSAMPLE
ASSAY
257 results
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total RNA-seq
ChIP-seq
GRO-seq
pCHi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
adipocyte
4
53
1
pancreatic endoderm
4
18
1
cardiac precursors (cardiac muscle cell)
19
hepatocyte
15
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