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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
195
ChIP-seq
187
single cell RNA-seq
151
total RNA-seq
48
snATAC-seq
47
WGBS
31
DNase-seq
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
195
DNA binding
Target of assay
153
histone
153
histone modification
78
broad histone mark
75
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
53
August, 2017
37
May, 2021
32
September, 2018
31
June, 2019
24
October, 2019
9
November, 2017
5
May, 2019
4
August, 2021
Available data
163
bigWig
158
bam
142
bed narrowPeak
94
fastq
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
16
tagAlign
3
bed bed3+
Organism
195
Homo sapiens
Biosample type
905
tissue
482
cell line
198
in vitro differentiated cells
195
primary cell
3
stem cell
Organ
92
epithelium
70
pancreas
23
vasculature
20
blood vessel
17
vein
15
kidney
12
connective tissue
10
musculature of body
9
brain
5
heart
4
liver
3
eye
Project
195
AMP
T1D
Genome assembly (visualization)
163
hg19
123
GRCh38
Lab
162
AMP-T2D consortium
33
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
CRISPR RNA-seq
award.project!
T1D
BIOSAMPLE
ASSAY
195 results
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ChIP-seq
primary cell
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
skeletal muscle myoblast
15
pancreatic alpha cell
13
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