Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
Hi-C
1
whole genome sequencing assay
Assay category
1917
Transcription
1871
DNA binding
832
DNA accessibility
97
DNA methylation
11
3D chromatin structure
1
DNA sequencing
Date released
8
July, 2019
2
August, 2021
1
December, 2018
1
October, 2019
Available data
hic
20
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
3
cool
1
bedpe
1
fastq
1
vcf
Organism
12
Homo sapiens
Biosample type
5
tissue
4
primary cell
3
cell line
Organ
4
limb
4
musculature of body
3
brain
3
liver
2
blood vessel
2
epithelium
2
pancreas
2
vasculature
1
connective tissue
Project
12
AMP
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
10
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
1
inconsistent assembly
assay_title!
CRISPR RNA-seq
files.file_type!
hic
BIOSAMPLE
ASSAY
12 results
search-icon
table-tab-icon
Clear Filters
Hi-C
whole genome sequencing assay
tissue
gastrocnemius medialis
4
islet of Langerhans
1
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
HepG2
1
1
Panc1
1
Download