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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
RRBS
17
WGBS
7
ATAC-seq
Assay category
36
DNA methylation
7
DNA accessibility
Date released
23
July, 2019
7
November, 2018
6
August, 2017
5
February, 2023
2
February, 2021
Available data
3101
bam
2910
bigWig
1685
bed narrowPeak
1469
tsv
1217
fastq
1025
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
43
Homo sapiens
Biosample type
30
tissue
11
primary cell
in vitro differentiated cells
2
cell line
Organ
8
heart
6
epithelium
6
pancreas
4
bone element
4
connective tissue
4
kidney
4
liver
4
musculature of body
4
skeleton
3
brain
2
adipose tissue
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
43
AMP
Genome assembly (visualization)
26
hg19
19
GRCh38
Lab
43
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
inconsistent replicate
assay_title!
CRISPR RNA-seq
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
43 results
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Clear Filters
RRBS
WGBS
ATAC-seq
tissue
heart left ventricle
1
2
pancreas
1
2
adipose tissue
2
body of pancreas
2
brain
1
1
+ See 15 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 6 more…
cell line
HepG2
1
1
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