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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
10
total RNA-seq
3
STARR-seq
2
ATAC-seq
2
Capture-C
2
Hi-C
1
whole genome sequencing assay
Assay category
18
DNA binding
10
Transcription
2
3D chromatin structure
2
DNA accessibility
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
235
May, 2021
198
May, 2022
102
February, 2023
59
September, 2020
45
February, 2021
45
May, 2020
40
May, 2024
38
August, 2021
19
April, 2020
16
January, 2021
10
November, 2020
7
August, 2020
5
March, 2019
4
March, 2023
3
October, 2022
1
October, 2017
Available data
16
bed narrowPeak
16
bigWig
10
tsv
2
bed bed3+
2
bedpe bed3+
1
hic
1
vcf
Organism
38
Homo sapiens
Biosample type
32
cell line
4
in vitro differentiated cells
2
tissue
Organ
kidney
31
liver
4
connective tissue
2
pancreas
Project
38
AMP
Genome assembly (visualization)
19
hg19
Lab
AMP-T2D consortium
34
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_title!
CRISPR RNA-seq
lab.title!
AMP-T2D consortium
organ_slims!
kidney
BIOSAMPLE
ASSAY
38 results
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Clear Filters
ChIP-seq
total RNA-seq
STARR-seq
ATAC-seq
Capture-C
Hi-C
whole genome sequencing assay
cell line
HepG2
18
9
2
1
1
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
tissue
islet of Langerhans
1
1
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