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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
971
total RNA-seq
841
ChIP-seq
252
ATAC-seq
161
single cell RNA-seq
142
DNase-seq
27
snATAC-seq
26
WGBS
25
pCHi-C
16
small RNA-seq
12
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1148
Transcription
841
DNA binding
425
DNA accessibility
37
DNA methylation
12
3D chromatin structure
Target of assay
579
histone modification
578
histone
309
narrow histone mark
269
broad histone mark
170
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
450
February, 2021
284
August, 2017
193
May, 2020
173
October, 2019
172
August, 2021
131
June, 2019
120
July, 2018
108
May, 2019
91
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
72
July, 2019
59
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
23
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1793
bam
1681
bigWig
1069
tsv
892
bed narrowPeak
477
bigBed narrowPeak
377
fastq
238
tagAlign
177
bed broadPeak
169
bed bed3+
txt
140
bigBed broadPeak
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2489
Homo sapiens
Biosample type
2498
tissue
1088
primary cell
661
cell line
391
in vitro differentiated cells
9
stem cell
Organ
547
connective tissue
499
pancreas
488
adipose tissue
361
liver
313
heart
265
brain
237
kidney
133
blood vessel
133
vasculature
limb
81
musculature of body
73
artery
70
bone element
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2401
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1763
GRCh38
1658
hg19
Lab
2209
AMP-T2D consortium
85
Katalin Susztak, Upenn
47
KPMP
46
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
6
inconsistent ontology term
3
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
CRISPR RNA-seq
organ_slims!
limb
files.file_type!
txt
BIOSAMPLE
ASSAY
2498 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
292
70
68
1
7
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
1
kidney
27
75
51
13
6
1
1
1
heart left ventricle
3
35
2
18
3
4
1
1
1
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