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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
8
snATAC-seq
2
ATAC-seq
2
WGBS
1
DNase-seq
1
pCHi-C
Assay category
70
DNA binding
11
DNA accessibility
2
DNA methylation
Target of assay
57
transcription factor
14
control
10
RNA binding protein
chromatin remodeller
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
32
December, 2018
22
November, 2018
19
January, 2019
8
January, 2021
1
January, 2018
1
March, 2020
1
October, 2017
Available data
74
bam
74
fastq
61
bigWig
58
bed narrowPeak
57
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
84
Homo sapiens
Biosample type
51
cell line
25
tissue
8
primary cell
Organ
946
pancreas
768
liver
682
connective tissue
523
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
76
AMP
8
T1D
Genome assembly (visualization)
60
GRCh38
59
hg19
Lab
76
AMP-T2D consortium
8
Kyle Gaulton, UCSD
assay_title!
CRISPR RNA-seq
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
84 results
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Clear Filters
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
cell line
GM12878
50
1
tissue
spleen
20
1
2
1
1
primary cell
peripheral blood mononuclear cell
8
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