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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
93
single cell RNA-seq
72
total RNA-seq
47
ATAC-seq
30
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
134
DNA binding
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
20
control
17
transcription factor
11
RNA binding protein
Date released
57
April, 2019
40
May, 2024
21
May, 2019
6
February, 2021
5
June, 2019
5
October, 2019
Available data
114
bed narrowPeak
114
bigWig
93
bam
64
bigBed narrowPeak
6
tagAlign
Organism
134
Homo sapiens
Biosample type
123
tissue
6
cell line
5
primary cell
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
134
heart
129
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
134
AMP
Genome assembly (visualization)
113
GRCh38
74
hg19
Lab
94
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
4
inconsistent ontology term
assay_title!
CRISPR RNA-seq
organ_slims!
kidney
BIOSAMPLE
ASSAY
134 results
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ChIP-seq
tissue
left cardiac atrium
40
heart left ventricle
35
heart
14
heart right ventricle
13
right atrium auricular region
10
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
primary cell
cardiac fibroblast
5
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