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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
46
ATAC-seq
35
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
50
DNA accessibility
35
DNA binding
Target of assay
21
histone
21
histone modification
14
broad histone mark
9
control
7
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
28
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
103
bam
86
bigWig
75
bed narrowPeak
58
tsv
25
bigBed narrowPeak
7
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
143
Homo sapiens
Biosample type
75
tissue
66
cell line
2
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
143
AMP
Genome assembly (visualization)
129
GRCh38
94
hg19
Lab
143
AMP-T2D consortium
assay_title!
CRISPR RNA-seq
BIOSAMPLE
ASSAY
143 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
36
5
2
tibial artery
1
1
23
2
pulmonary artery
2
islet of Langerhans
1
pituitary gland
1
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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