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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
21
DNA methylation
19
Transcription
Date released
33
July, 2019
6
August, 2017
1
March, 2023
Available data
19
bed bedMethyl
19
bigBed bedMethyl
18
bam
18
bigWig
18
tsv
4
fastq
Organism
39
Homo sapiens
Biosample type
27
tissue
12
primary cell
1
cell line
Organ
7
musculature of body
6
brain
6
epithelium
5
kidney
5
liver
4
connective tissue
4
pancreas
3
adipose tissue
3
heart
1
eye
1
pericardium
1
vasculature
Project
39
AMP
1
community
Genome assembly (visualization)
37
hg19
18
GRCh38
Lab
39
AMP-T2D consortium
1
Anna Gloyn, Oxford
Audit category:
2
inconsistent ontology term
assay_title!
CRISPR genome editing followed by DNA sequencing
BIOSAMPLE
ASSAY
40 results
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RRBS
small RNA-seq
shRNA RNA-seq
tissue
skeletal muscle tissue
4
1
body of pancreas
2
liver
1
1
right lobe of liver
2
brain
1
+ See 15 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 7 more…
cell line
EndoC-BH1
1
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