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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
Assay category
49
DNA binding
Target of assay
35
transcription factor
22
histone
22
histone modification
14
narrow histone mark
broad histone mark
6
chromatin remodeller
3
RNA binding protein
1
recombinant protein
Date released
34
August, 2017
September, 2018
10
November, 2017
3
November, 2018
1
December, 2017
1
October, 2017
Available data
49
bam
49
fastq
47
bigWig
14
bed narrowPeak
13
bed bed3+
13
bigBed narrowPeak
1
bed broadPeak
1
tagAlign
Organism
49
Homo sapiens
Biosample type
22
tissue
13
cell line
8
primary cell
6
in vitro differentiated cells
Organ
17
connective tissue
17
pancreas
13
liver
12
adipose tissue
1
brain
1
embryo
Project
49
AMP
Genome assembly (visualization)
47
hg19
40
GRCh38
Lab
49
AMP-T2D consortium
Audit category:
49
missing controlled_by
Audit category:
6
inconsistent control run_type
5
inconsistent control read length
assay_title!
CRISPR genome editing followed by DNA sequencing
target.investigated_as!
broad histone mark
month_released!
September, 2018
BIOSAMPLE
ASSAY
49 results
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Clear Filters
ChIP-seq
tissue
white adipose tissue
12
islet of Langerhans
9
brain
1
cell line
HepG2
13
primary cell
pancreatic endocrine cell
8
in vitro differentiated cells
adipocyte
5
pancreatic endoderm
1
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