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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
8
snATAC-seq
1
ATAC-seq
Assay category
33
DNA binding
9
DNA accessibility
Target of assay
26
transcription factor
8
RNA binding protein
8
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
1
January, 2018
Available data
33
bam
33
fastq
28
bigWig
27
bed narrowPeak
27
bigBed narrowPeak
Organism
42
Homo sapiens
Biosample type
34
cell line
8
primary cell
Organ
917
pancreas
777
liver
657
connective tissue
503
epithelium
485
adipose tissue
363
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
62
musculature of body
57
eye
42
blood
42
bodily fluid
41
nerve
34
embryo
20
lung
20
vein
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
34
AMP
8
T1D
Genome assembly (visualization)
28
hg19
27
GRCh38
Lab
34
AMP-T2D consortium
8
Kyle Gaulton, UCSD
assay_title!
CRISPR genome editing followed by DNA sequencing
files.file_type!
bed bed3+
month_released!
December, 2018
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
snATAC-seq
ATAC-seq
cell line
GM12878
33
1
primary cell
peripheral blood mononuclear cell
8
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