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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
81
total RNA-seq
40
ATAC-seq
5
ChIP-seq
5
pCHi-C
1
RRBS
Assay category
81
Transcription
40
DNA accessibility
5
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
150
February, 2021
39
February, 2023
21
October, 2019
3
June, 2019
1
February, 2020
1
July, 2019
1
May, 2021
Available data
88
txt
73
bam
64
bigWig
63
tsv
41
bed narrowPeak
6
bigBed narrowPeak
4
bed bed3
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
216
Homo sapiens
Biosample type
211
tissue
5
primary cell
Organ
917
pancreas
778
liver
657
connective tissue
503
epithelium
485
adipose tissue
363
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
215
AMP
1
T1D
Genome assembly (visualization)
100
hg19
68
GRCh38
Lab
215
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
assay_title!
CRISPR genome editing followed by DNA sequencing
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
216 results
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RNA microarray
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
RRBS
tissue
bone element
84
bone tissue
58
islet of Langerhans
14
1
2
4
retina
3
15
pigmented layer of retina
2
12
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primary cell
retinal pigment epithelial cell
3
1
megakaryocyte
1
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