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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
85
single cell RNA-seq
48
snATAC-seq
47
WGBS
39
ATAC-seq
3
Hi-C
Assay category
87
DNA accessibility
85
Transcription
47
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
45
February, 2021
40
September, 2020
3
October, 2022
Available data
153
zippedFastqFolder
77
fastq
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
222
Homo sapiens
Biosample type
222
primary cell
Organ
89
epithelium
89
pancreas
Project
1117
AMP
222
HPAP
48
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
3
hg19
Lab
222
Klaus Kaestner, Upenn
Audit category:
30
audit script error
assay_title!
CRISPR genome editing followed by DNA sequencing
total RNA-seq
files.file_type!
bigWig
organ_slims!
brain
BIOSAMPLE
ASSAY
222 results
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single cell RNA-seq
snATAC-seq
WGBS
ATAC-seq
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
31
22
1
pancreatic beta cell
16
13
1
pancreatic acinar cell
4
1
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