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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
23
ChIP-seq
6
single cell RNA-seq
3
total RNA-seq
1
Hi-C
1
RRBS
1
WGBS
1
pCHi-C
Assay category
43
DNA accessibility
23
DNA binding
9
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
11
October, 2019
10
February, 2021
6
August, 2021
3
February, 2020
2
July, 2019
1
March, 2020
Available data
185
bam
bigWig
133
bed narrowPeak
83
bigBed narrowPeak
68
tsv
17
bed broadPeak
17
bigBed broadPeak
13
bed bed3+
6
fastq
6
tagAlign
3
hic
2
bed bedMethyl
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
79
Homo sapiens
Biosample type
62
tissue
10
cell line
7
primary cell
Organ
316
pancreas
223
kidney
218
epithelium
167
liver
166
heart
113
connective tissue
101
bone element
79
vasculature
78
blood vessel
65
adipose tissue
64
brain
56
artery
55
eye
31
limb
26
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
6
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
79
AMP
Genome assembly (visualization)
43
GRCh38
10
hg19
Lab
79
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
CRISPR genome editing followed by DNA sequencing
files.file_type!
bigWig
bedpe bed3+
BIOSAMPLE
ASSAY
79 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
Hi-C
RRBS
WGBS
pCHi-C
tissue
coronary artery
35
2
1
aorta
2
4
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
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cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
5
1
choroid plexus epithelial cell
1
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