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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
15
ATAC-seq
13
single cell RNA-seq
1
MPRA
1
snATAC-seq
Assay category
72
Transcription
16
DNA accessibility
Date released
91
February, 2021
57
August, 2021
17
February, 2023
7
May, 2022
1
October, 2022
Available data
3392
bam
3169
bigWig
1817
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
172
Homo sapiens
Biosample type
162
tissue
8
in vitro differentiated cells
2
cell line
1
primary cell
Organ
92
bone element
62
kidney
8
skeleton
6
connective tissue
6
pancreas
1
brain
1
liver
1
musculature of body
Project
173
AMP
Genome assembly (visualization)
16
hg19
2
GRCh38
Lab
107
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
1
inconsistent replicate
assay_title!
CRISPR genome editing followed by DNA sequencing
files.file_type!
ibed
BIOSAMPLE
ASSAY
173 results
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Clear Filters
RNA microarray
total RNA-seq
ATAC-seq
single cell RNA-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
1
ilium
1
1
+ See 4 more…
in vitro differentiated cells
chondrocyte
5
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
HepG2
1
MIN6
1
primary cell
osteoblast
1
See all biosamples
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