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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
62
ChIP-seq
Assay category
197
DNA accessibility
62
DNA binding
Target of assay
46
transcription factor
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
6
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
182
June, 2019
49
November, 2017
15
August, 2017
9
November, 2018
3
October, 2019
1
November, 2020
Available data
3156
bam
2963
bigWig
1634
bed narrowPeak
1532
tsv
1299
fastq
932
bigBed narrowPeak
381
tagAlign
296
bed broadPeak
259
bigBed broadPeak
252
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
259
Homo sapiens
Biosample type
171
tissue
46
cell line
41
primary cell
1
in vitro differentiated cells
Organ
78
kidney
50
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
259
AMP
Genome assembly (visualization)
245
GRCh38
237
hg19
Lab
259
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
inconsistent control read length
1
inconsistent assembly
assay_title!
CRISPR genome editing followed by DNA sequencing
organ_slims!
blood vessel
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
259 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 36 more…
cell line
HepG2
45
Panc1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
glomerular visceral epithelial cell
2
+ See 15 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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