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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
DNase-seq
17
ChIP-seq
Assay category
24
DNA accessibility
17
DNA binding
Target of assay
13
histone
13
histone modification
7
narrow histone mark
6
broad histone mark
4
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
22
June, 2019
14
August, 2017
4
November, 2017
1
November, 2020
Available data
589
bigWig
582
bam
406
fastq
278
bed narrowPeak
268
tsv
153
zippedFastqFolder
100
tagAlign
92
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
31
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
41
Homo sapiens
Biosample type
171
tissue
59
cell line
41
primary cell
1
in vitro differentiated cells
Organ
22
epithelium
12
vasculature
11
brain
10
kidney
blood vessel
6
connective tissue
4
vein
3
heart
2
liver
1
eye
1
musculature of body
Project
41
AMP
Genome assembly (visualization)
39
GRCh38
35
hg19
Lab
41
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_title!
CRISPR genome editing followed by DNA sequencing
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
41 results
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DNase-seq
ChIP-seq
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
glomerular visceral epithelial cell
2
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