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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
3
WGBS
2
ATAC-seq
2
DNase-seq
1
pCHi-C
Assay category
37
DNA binding
4
DNA accessibility
3
DNA methylation
Target of assay
19
control
17
transcription factor
5
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Date released
23
October, 2018
18
August, 2017
1
August, 2018
1
June, 2019
1
November, 2018
1
October, 2017
Available data
442
bam
425
bigWig
401
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
45
Homo sapiens
Biosample type
44
tissue
1
in vitro differentiated cells
Organ
477
pancreas
472
liver
278
epithelium
116
connective tissue
78
kidney
60
blood
60
bodily fluid
54
brain
45
adipose tissue
36
limb
36
musculature of body
30
heart
27
embryo
24
spleen
19
vasculature
18
ureter
14
blood vessel
4
artery
4
eye
2
nerve
2
vein
Project
45
AMP
Genome assembly (visualization)
24
GRCh38
22
hg19
Lab
45
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_title!
CRISPR genome editing followed by DNA sequencing
BIOSAMPLE
ASSAY
45 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
tissue
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
white adipose tissue
12
adipose tissue
2
3
in vitro differentiated cells
white fat cell
1
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