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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
Hi-C
Assay category
5
3D chromatin structure
Date released
3
July, 2019
1
March, 2019
1
October, 2019
Available data
2799
bam
2599
bigWig
1742
bed narrowPeak
1257
fastq
1122
tsv
1014
bigBed narrowPeak
376
tagAlign
312
bed broadPeak
276
bigBed broadPeak
246
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
5
Homo sapiens
Biosample type
3
primary cell
1
cell line
1
tissue
Organ
3
brain
2
blood vessel
2
epithelium
2
pancreas
2
vasculature
connective tissue
1
liver
Project
5
AMP
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
4
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent assembly
assay_title!
CRISPR genome editing followed by DNA sequencing
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
5 results
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Hi-C
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
cell line
Panc1
1
tissue
islet of Langerhans
1
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