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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
833
ChIP-seq
569
total RNA-seq
176
ATAC-seq
176
DNase-seq
173
single cell RNA-seq
86
RNA microarray
26
snATAC-seq
24
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
833
DNA binding
756
Transcription
382
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
595
histone modification
594
histone
311
narrow histone mark
283
broad histone mark
163
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
240
October, 2019
228
August, 2021
227
August, 2017
193
May, 2020
162
June, 2019
120
July, 2018
115
May, 2019
101
February, 2021
February, 2023
82
November, 2017
80
April, 2019
67
July, 2019
66
May, 2022
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
March, 2020
39
November, 2019
25
November, 2018
23
February, 2020
22
October, 2017
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1409
bam
1291
bigWig
909
bed narrowPeak
615
tsv
551
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
153
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2128
Homo sapiens
Biosample type
2136
tissue
961
primary cell
656
cell line
294
in vitro differentiated cells
9
stem cell
Organ
connective tissue
487
adipose tissue
487
pancreas
361
liver
299
kidney
277
heart
264
brain
150
bone element
122
limb
98
blood vessel
98
vasculature
82
musculature of body
43
nerve
38
artery
25
eye
25
spleen
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2057
AMP
47
KPMP
19
LungMap
13
T1D
Genome assembly (visualization)
1344
GRCh38
1241
hg19
Lab
1802
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
CRISPR genome editing followed by DNA sequencing
organ_slims!
connective tissue
month_released!
February, 2023
BIOSAMPLE
ASSAY
2136 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
70
293
57
1
5
4
3
1
1
4
liver
145
167
20
2
1
1
3
1
1
1
kidney
27
49
75
13
64
6
1
1
1
bone element
84
heart left ventricle
35
3
2
3
18
1
4
1
1
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