Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
3
Hi-C
Assay category
12
DNA accessibility
3
3D chromatin structure
Date released
10
February, 2023
3
October, 2022
2
February, 2021
Available data
3385
bam
3163
bigWig
1784
bed narrowPeak
1595
tsv
1358
fastq
1036
bigBed narrowPeak
398
tagAlign
318
bed broadPeak
281
bigBed broadPeak
269
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
15
Homo sapiens
Biosample type
5
in vitro differentiated cells
5
tissue
4
primary cell
1
cell line
Organ
6
connective tissue
4
bone element
4
skeleton
3
epithelium
3
pancreas
1
brain
1
liver
Project
12
AMP
3
HPAP
Genome assembly (visualization)
15
hg19
2
GRCh38
Lab
12
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
1
inconsistent replicate
assay_title!
CRISPR genome editing followed by DNA sequencing
organ_slims!
eye
BIOSAMPLE
ASSAY
15 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
Hi-C
in vitro differentiated cells
chondrocyte
5
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
primary cell
osteoblast
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
HepG2
1
Download