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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
15
total RNA-seq
1
Hi-C
Assay category
57
DNA binding
15
Transcription
1
3D chromatin structure
Target of assay
27
transcription factor
16
histone
16
histone modification
12
control
8
broad histone mark
8
narrow histone mark
2
RNA binding protein
1
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
293
October, 2019
211
June, 2019
200
May, 2022
171
February, 2023
168
July, 2018
120
May, 2019
107
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
67
December, 2017
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
34
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
73
fastq
72
bam
60
bigWig
45
bed narrowPeak
29
bigBed narrowPeak
15
tsv
Organism
73
Homo sapiens
Biosample type
39
in vitro differentiated cells
27
cell line
7
tissue
Organ
26
blood
26
bodily fluid
13
embryo
7
spleen
1
liver
Project
73
AMP
Genome assembly (visualization)
60
GRCh38
60
hg19
Lab
73
AMP-T2D consortium
Audit category:
inconsistent control
Audit category:
2
inconsistent control read length
assay_title!
CRISPR genome editing followed by DNA sequencing
organ_slims!
eye
audit.ERROR.category!
inconsistent control
BIOSAMPLE
ASSAY
73 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
in vitro differentiated cells
pancreatic endoderm
9
4
definitive endodermal cell
3
2
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
+ See 2 more…
cell line
GM12878
26
HepG2
1
tissue
spleen
7
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