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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
DNase-seq
4
ATAC-seq
Assay category
DNA binding
13
DNA accessibility
Date released
6
June, 2019
3
October, 2019
2
August, 2017
1
November, 2018
1
November, 2020
Available data
495
bigWig
491
bam
478
tsv
17
bed narrowPeak
16
bed bed3+
13
bigBed narrowPeak
11
fastq
9
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
13
Homo sapiens
Biosample type
6
primary cell
4
tissue
3
in vitro differentiated cells
Organ
80
kidney
40
epithelium
36
limb
33
brain
33
musculature of body
32
pancreas
30
heart
18
ureter
13
connective tissue
12
vasculature
10
blood vessel
6
liver
4
adipose tissue
4
artery
4
eye
3
vein
2
nerve
1
spleen
Project
13
AMP
Genome assembly (visualization)
12
hg19
10
GRCh38
Lab
13
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
CRISPR genome editing followed by DNA sequencing
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
13 results
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DNase-seq
ATAC-seq
primary cell
cardiac fibroblast
3
brain pericyte
1
hepatic stellate cell
1
osteoblast
1
tissue
omental fat pad
2
adipose tissue
1
subcutaneous adipose tissue
1
in vitro differentiated cells
adipocyte
1
2
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