Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
9
DNase-seq
4
ATAC-seq
2
WGBS
1
RRBS
Assay category
15
DNA binding
13
DNA accessibility
3
DNA methylation
Target of assay
9
histone
9
histone modification
6
RNA binding protein
6
transcription factor
5
narrow histone mark
4
broad histone mark
Date released
15
June, 2019
5
August, 2017
5
October, 2018
3
October, 2019
1
July, 2019
1
November, 2018
1
November, 2020
Available data
593
bam
570
bigWig
478
tsv
101
fastq
75
bed narrowPeak
28
bigBed narrowPeak
27
bed bed3+
22
tagAlign
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
31
Homo sapiens
Biosample type
16
primary cell
12
tissue
3
in vitro differentiated cells
Organ
361
liver
129
brain
108
kidney
102
heart
97
pancreas
85
limb
85
vasculature
82
epithelium
80
blood vessel
54
blood
54
bodily fluid
51
musculature of body
31
connective tissue
26
nerve
25
artery
18
ureter
15
spleen
13
vein
12
adipose tissue
7
eye
1
pericardium
Project
31
AMP
Genome assembly (visualization)
28
hg19
27
GRCh38
Lab
31
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
assay_title!
CRISPR genome editing followed by DNA sequencing
BIOSAMPLE
ASSAY
31 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
RRBS
primary cell
cardiac fibroblast
3
3
1
mesenchymal stem cell
6
brain pericyte
1
hepatic stellate cell
1
osteoblast
1
tissue
omental fat pad
3
2
adipose tissue
1
1
2
subcutaneous adipose tissue
2
1
in vitro differentiated cells
adipocyte
1
2
Download