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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
9
DNase-seq
1
ATAC-seq
Assay category
15
DNA binding
10
DNA accessibility
Target of assay
9
histone
9
histone modification
6
RNA binding protein
6
transcription factor
5
narrow histone mark
4
broad histone mark
Date released
15
June, 2019
5
October, 2018
3
August, 2017
October, 2019
1
November, 2018
1
November, 2020
Available data
593
bam
567
bigWig
478
tsv
101
fastq
75
bed narrowPeak
27
bed bed3+
25
bigBed narrowPeak
22
tagAlign
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
25
Homo sapiens
Biosample type
15
primary cell
9
tissue
1
in vitro differentiated cells
Organ
358
liver
127
brain
103
kidney
94
heart
84
pancreas
62
epithelium
54
blood
54
bodily fluid
50
vasculature
47
musculature of body
46
blood vessel
38
limb
25
connective tissue
18
ureter
13
spleen
9
adipose tissue
6
eye
5
artery
Project
25
AMP
Genome assembly (visualization)
25
GRCh38
24
hg19
Lab
25
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
assay_title!
CRISPR genome editing followed by DNA sequencing
month_released!
October, 2019
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
DNase-seq
ATAC-seq
primary cell
cardiac fibroblast
3
3
mesenchymal stem cell
6
brain pericyte
1
hepatic stellate cell
1
osteoblast
1
tissue
omental fat pad
3
2
subcutaneous adipose tissue
2
1
adipose tissue
1
in vitro differentiated cells
adipocyte
1
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