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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
13
DNase-seq
4
ATAC-seq
Assay category
36
DNA binding
17
DNA accessibility
Target of assay
29
histone
29
histone modification
18
broad histone mark
11
narrow histone mark
7
RNA binding protein
7
transcription factor
Date released
23
October, 2019
17
June, 2019
5
October, 2018
3
August, 2017
3
May, 2019
1
November, 2018
1
November, 2020
Available data
695
bam
655
bigWig
536
tsv
149
bed narrowPeak
101
fastq
53
bigBed narrowPeak
31
bed bed3+
28
tagAlign
14
bed broadPeak
13
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
53
Homo sapiens
Biosample type
35
tissue
15
primary cell
3
in vitro differentiated cells
Organ
358
liver
127
brain
104
kidney
94
heart
91
pancreas
84
limb
83
vasculature
79
blood vessel
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
53
AMP
Genome assembly (visualization)
52
hg19
50
GRCh38
Lab
53
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
assay_title!
CRISPR genome editing followed by DNA sequencing
BIOSAMPLE
ASSAY
53 results
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ChIP-seq
DNase-seq
ATAC-seq
tissue
tibial artery
18
2
coronary artery
3
2
omental fat pad
3
2
subcutaneous adipose tissue
2
1
adipose tissue
1
1
primary cell
cardiac fibroblast
3
3
mesenchymal stem cell
6
brain pericyte
1
hepatic stellate cell
1
osteoblast
1
in vitro differentiated cells
adipocyte
1
2
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