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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ChIP-seq
22
ATAC-seq
6
DNase-seq
1
FAIRE-seq
Assay category
30
DNA binding
29
DNA accessibility
Target of assay
25
histone
25
histone modification
13
narrow histone mark
12
broad histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
14
December, 2017
14
September, 2018
13
October, 2019
6
June, 2019
5
September, 2017
4
November, 2017
3
August, 2017
Available data
284
bam
271
bigWig
257
fastq
148
tsv
128
bed narrowPeak
80
zippedFastqFolder
59
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
11
bed bed3+
7
tagAlign
6
hic
5
bedpe bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
cool
2
hdf5
1
tar
Organism
59
Homo sapiens
Biosample type
45
primary cell
14
in vitro differentiated cells
Organ
358
liver
127
brain
kidney
94
heart
91
pancreas
84
limb
83
vasculature
79
blood vessel
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
59
AMP
Genome assembly (visualization)
59
hg19
58
GRCh38
Lab
59
AMP-T2D consortium
assay_title!
CRISPR genome editing followed by DNA sequencing
organ_slims!
kidney
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
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in vitro differentiated cells
hepatocyte
14
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